Computer Science and Engineering
 Gothenburg University | Chalmers

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Ruben B. Schilling

Doctoral Student

PhD studies 2007–09; Diplom CS, Universität Freiburg (main supervisor: Prof. Dr.-Ing. Hans Burkhardt) 2007.<br> Now Technischer Produktmanager @ Digitale Schiene Deutschland.

Ruben Schilling received a Diplom in computer science and bioinformatics from the University of Freiburg with a thesis on non-rigid registration of mouse embryo tomograms. He has a specialization in graphical and imaging systems. In 2004-2005 he was a graduate student in the Baden-Württemberg program at UNCG, USA. After doing an internship with the Algorithmics group in summer 2005 he joined the group again for his student research project and diploma thesis. His research interests lie in PDEs for image processing, optimization, shape space and shape descriptors, atlas based segmentation, pattern recognition and biomedical and bioinformatics applications. In the applications I am especially interested in designing methods for co-localization detection on multiple abstraction levels of molecular processes and classifying aberrancies. Ruben is supported by a Max-Planck scholarship and a member of the DAGM and the ISCB.

Now with Assystem Group.

Upcoming/Recent presentations

May 24, 2010. Computational analysis of 3D mouse embryo images. Invited Talk at MRC Human Genetics Unit Western General Hospital Crewe Road Edinburgh EH4 2XU, UK.

April 19, 2010. Computational analysis of 3D mouse embryo images. Invited Talk at Department of Computer Science & BioMaPS Institute for Quantitative Biology Rutgers, The State University of New Jersey, Piscataway, NJ, USA

April 5, 2009. Computational analysis of 3D mouse embryo in-situ images. Poster at BioimageInformatics Conference 2009 Howard Hughes Medical Institute Janelia Farm Campus 19700 Helix Drive Ashburn, VA 20147

Nov. 26, 2008. Computational analysis of 3D mouse embryo images. Invited Talk at Universität zu Lübeck Institut für Mathematik

July 21, 2008. Automatic Fusion of 3D staining patterns from mouse embryo tomograms. Poster at ISMB 2008 Toronto

Recent publications

R.B. Schilling, I.G. Costa and A. Schliep pGQL: A Probabilistic Graphical Query Language for Gene Expression Time Courses. BioData Mining 2011, 4:9.

R. Schilling Elastic registration in 3D volume data. Master's Thesis, Universität Freiburg, 2007.

Project lead

MouseAtlas: Recognition, analysis and visualization of gene expression patterns in optical tomograms (OPT) of embryonal mice.

Software lead

Mouse3D: Mouse3D.

pGQL: probabilistic Graphical Query Language.