Computer Science and Engineering
 Gothenburg University | Chalmers

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Rajat S Roy

Alumn
Doctoral Student

E-mail: rajatroy@cs.rutgers.edu
Scientist with Illumina, Inc. (San Diego, CA)
 
 
 
 
 
 

Rajat Shuvro Roy comes from Bangladesh. He received his B.Sc. in Computer Science and Engineering from Bangladesh University of Engineering and Technology. His PhD student in Computer Science at Rutgers University, New Brunswick, NJ was jointly supervised by Prof. Alexander Schliep and Prof. Debashish Bhattacharya, SEBS.

Upcoming/Recent presentations

Aug. 2, 2013. Comparison of eukaryotic single cell assembly tools. Contributed Talk at ICOP XIV - International Congress of Protistology. July 28 to August 2 2013, Vancouver, Canada.

Recent publications

D. Bhattacharya, R.S. Roy, D.C. Price and A. Schliep Studying the single life of eukaryotic microbes: Single cell genomics of marine plankton. Biochemist Magazine 2014, 36:1.

R.S. Roy, D. Bhattacharya and A. Schliep Turtle: Identifying frequent k-mers with cache-efficient algorithms. Bioinformatics 2014, 14:30, 1950–7.

R.S. Roy, D.C. Price, A. Schliep, G. Cai, A. Korobeynikov, E.C. Yang and D. Bhattacharya Single cell genome analysis of an uncultured heterotrophic stramenopile. Sci Rep 2014, 4:4780.

R.S. Roy Improving genome assembly by identifying reliable sequencing data. Ph.D. Thesis, Oct 2014.

R.S. Roy, D. Bhattacharya and A. Schliep Turtle: Identifying frequent k-mers with cache-efficient algorithms.. 2013. Arxiv.

Software lead

Turtle: Identifying frequent k-mers with cache-efficient algorithms.

SLiQ: Simple linear inequalities based Mate-Pair reads filtering and scaffolding.