Rajat S Roy

Alumn

Ph.D. in Computer Science, Rutgers, July 2014.
Now: Senior Bioinformatics Scientist with Illumina, Inc. (San Diego, CA)

E-mail: rajatroy@cs.rutgers.edu

Rajat Shuvro Roy comes from Bangladesh. He received his B.Sc. in Computer Science and Engineering from Bangladesh University of Engineering and Technology. His PhD student in Computer Science at Rutgers University, New Brunswick, NJ was jointly supervised by Prof. Alexander Schliep and Prof. Debashish Bhattacharya, SEBS.

Publications

Bhattacharya et al.. Studying the single life of eukaryotic microbes: Single cell genomics of marine plankton. Biochemist Magazine 2014, 36:1.

Roy et al.. Single cell genome analysis of an uncultured heterotrophic stramenopile. Sci Rep 2014, 4:4780.

Roy. Improving genome assembly by identifying reliable sequencing data. Ph.D. Thesis, Oct 2014.

Roy et al.. Turtle: Identifying frequent k-mers with cache-efficient algorithms. Bioinformatics 2014, 14:30, 1950–7.

Roy et al.. Turtle: Identifying frequent k-mers with cache-efficient algorithms.. Technical report, May 2013. Arxiv.

Presentations

Aug. 2, 2013. Comparison of eukaryotic single cell assembly tools. Contributed Talk at ICOP XIV - International Congress of Protistology. July 28 to August 2 2013, Vancouver, Canada.

Project or Software Lead

Turtle: Identifying frequent k-mers with cache-efficient algorithms.

SLiQ: Simple linear inequalities based Mate-Pair reads filtering and scaffolding.