A solution from MCL: best mapping to MIPS using the Simpson coefficient

MIPS name Cluster (genes)
500.40.10
500.40.20
510.190.110
310.10
140.30.10
510.190.40
510.190.130
500.20.20
500.20.10
500.10.50
320
310
290.20
290.10
200
170
140.30.30.10
510.190.70
510.180.50.20
510.180.50.10
510.140
500.10.80
500.10.110
470.20
410.40.140
40
380
360.10
300
140.30.20
DJP1,MET4,ATG3,THR1,HIR1,ARG1
YAT1,LAP3,GIS2,CYC3,SER1,MDR1
MOB1,ILV5,YJR110W,MSH2,YHR112C,PRM8
HEM2,DPM1,YBL111C,RPL10,EAP1,YDR531W
ROK1,KAP123,RIB1,RPS4B,KAP114,MET2
UBP10,KIP1,YKL100C,YCR060W,PUF4,CEP3
YKR088C,CHS2,YDR117C,MKK1,DOS2,PSA1
URA2,BOI1,FAS1,SQT1,NMD4,PIR1
CCH1,BNA4,HEM12,YPL009C,MSW1,PAM1
PTC2,ARE2,RPL11B,YLR301W,ZWF1,RPS5
CSE1,RPS18A,SPF1,CCA1,YIL083C,BSD2
KEM1,RPL3,MTO1,YHR133C,HSC82,BBC1
YMR110C,MBP1,YMR178W,KIN1,RPL28,UBA4
MET7,YIM1,SCW11,RPL11A,YPL088W,LAP4
SCO1,HEM1,RNH70,ENT1,CBK1,CAR1
YBR162C,CLU1,SKS1,MPM1,NEO1,HIS4
CDC45,HOM2,GSH2,ECM39,GCV2,YBR204C
SHQ1,STE24,YMR226C,FAT1,CTP1,YOR086C
NUP49,SOL4,SKT5,EFB1,NOT5,KIN82
TSC13,PAB1,YER156C,VMA2,RVB2,PCT1
RPS17B,KKQ8,BEM4,GPI8,IMD4,SEC16
TDH1,MSS51,YMR299C,SGN1,BTS1,PAN6
KIP3,RPS10B,MKT1,RPT3,ADE5-7,PYK2
CYT1,NIC96,RAD50,STI1,SMP2,ECM21
MGE1,YLR089C,GDA1,MAM3,YMR185W,YML059C
PRR1,RPM2,BRO1,RPS0A,EFT1,GPT2
TSA1,DNM1,MOT2,NPY1,MCR1,RPL16A
RCK2,ECM1,SIS1,CWP1,ECM17,RPL16B
COX13,YDR330W,MET6,LAS21,YMR010W,RPL5
CYS4,ADE4,FKS1,MET10,YOR006C,YIL055C
YLR257W,SSE1,PRS5,RPL1A,RPS14B,YHR036W
HMG2,PRK1,TSC10,GBP2,CBP2,COX15
YNL313C,RPL13B,RPL24A,SFB3,TIF1,COQ6
SNA2,RPL20A,YPR118W,ADE3,GCR2,ARR4
MDN1,COQ1,ATG20,XBP1,DED81,KEX1
THS1,LEU1,FES1,CDC9,LYS12,PUT2
HSP82,NAB6,SKN7,YDR338C,MDG1,SVL3
VAS1,YBR287W,ARO9,IDP1,GPA2,RTG3
ECM25,PCL6,GEA2,ALD4,RPS22A,RMD9
YGR016W,POM152,RPS17A,MIR1,TRM3,RER2
OSH6,MOT1,RPL30,SCS7,DEF1,OSM1
YER080W,CDC5,PEX13,ASP1,RPS3,PDS5
YGR205W,ESS1,CRZ1,BNA3,SUR2,RPP0
YBR246W,YOR004W,YAL048C,RPL12B,BZZ1,RTG1
RPL31A,ARO1,SSA2,STE20,MDM38,RPN2
YOL098C,YNR074C,YAP3,FPR3,YDR051C,YBR030W
YOR131C,RPS24A,RPN3,TOP2,NAR1,NUP133
RPA135,FAS2,SEC1,RPL13A,YMR071C,RPS9A
YIR035C,MSN5,HXT7,RPS1B,GZF3,NAM7
YGR266W,CYS3,OXR1,YCS4,GCS1,LSB1
YLR187W,MCM6,RPL2B,MSC7,ATP4,RPS24B
SSE2,MBA1,GCV1,YPR174C,RPL15A,CTR86
FOB1,MCT1,MLP1,MCM2,HIS1,MCK1
YLL012W,AAC3,CRM1,ATG9,HNT1,RPS18B
SCJ1,CAJ1,GSF2,PRX1,SMI1,YMC2
BUD22,NRP1,VPS74,BUD2,MDJ1,GPM1
VPS1,IXR1,RAD51,RPL17A,SSN8,YNR029C
RIB7,GTR1,CBP3,SLG1,UFD4,RPO41
YDR365C,SAM1,TFB3,MDH1,MVD1,ALA1
PIM1,YRB30,RKI1,HSP104,YPR089W,PBP2
GFA1,TIM44,NUP57,RPL25,YDR539W,YBR025C
BIM1,BRF1,FCP1,TIP1,RPL12A,EMI2
HEM13,NHP10,YDR071C,TUB3,GND1,TIF2
RPS6A,YKR079C,WHI3,PUF3,YBR007C,ROX1
YTA6,TUB2,NMD5,YAP1801,APD1,DLS1
RPL36B,VID24,TEF2,NIF3,PPT1,YNL247W
CDC14,YNL157W,RPL33A,NDI1,YBL036C,DYS1
SEC2,RPS11B,GLC3,YGR250C,SLF1,CAF20
VPS21,TYR1,RPL8B,LYS21,MTR10,ADH3
NUP192,SKY1,ALD2,SAM2,PGM1,TOM70
CTF4,YJL200C,DPH5,GLR1,YKL161C,RPL27B
GYP7,FUN30,CNS1,HTB2,ERG1,RHR2
YOR271C,YHR122W,LAG1,OXA1,UBA2,RPL27A
YHL021C,ACO1,ARP1,YMR315W,BEM3,UBP14
RPS0B,DLD1,BOI2,HIS3,YMR099C,IMD3
YDL086W,DDP1,TUB1,RPS13,BUL1,HOM3
SSA4,PHB2,ILS1,RPS22B,SMY2,SVF1
MAM33,PTM1,ALD6,FUN19,GYP1,ABD1
KAP120,RPS9B,SRO9,FAA3,YML131W,RPS4A
HSP42,DIA1,PHB1,DBF2,RPL6B,GGA2
RPS11A,TAT2,IST2,YCF1,ALD5,YHR020W
YBR238C,BEM2,RPS7A,YER004W,TOM40,NHP6B
RPS8B,HTS1,RPL1B,USO1,TFP1,AOS1
SDS23,EFT2,AKL1,YME1,YAP1802,YGL036W
YHM1,STE5,ERG10,NUM1,ILV1,YMR027W
RRN3,NUC1,NDE1,YDR161W,NPR1,YKR018C
DBF20,PMP1,ADE13,RPL7B,YGL082W,SUM1
STB6,SCP160,GCN20,PDC2,YBR139W,TAH11
GPI16,YBP1,FAR1,SSB1,YOL032W,BEM1
RTS2,IRR1,JSN1,PEP1,UBP12,SEC23
DDR48,DED1,RPP2B,YGR068C,NEW1,RNA1
BNI1,RPT6,AAT1,KAR2,HAM1,KAP122
CDC60,RSM24,MLH2,UBP1,YBR070C,HTB1
SSC1,GLT1,MET3,SEC24,YPL109C,AAP1'
DTD1,PFK26,MET17,CDC24,PGI1,ATP2
SDS24,ARO4,MIS1,RPS29B,YER113C,NCB2
HGH1,BUL2,SSB2,RPL20B,GPD2,YPL207W
RPL7A,URA5,DOA4,DPS1,ARO7,CDC54
RPL6A,YOR205C,PUF2,ILV6,YHR113W,SHM2
RAP1,YPL225W,YPR148C,RPL17B,ABF1,RPT5
SFB2,GCN1,HNT2,ENT2,GGA1,RMS1
RFX1
510.40.20
133.40
MED8,MED1,MED4,SRB2,SRB4,SIN4
SRB5,YIL077C,ROX3,SRB8,SOH1,SSN2
PGD1,GAL11,SRB6,CSE2,IMH1,SRB7
MED11,NUT2,RGR1,MED6,SSN3,NUT1
MED7,MED2
440.30.10
440.30.10.10
SNU114,CWC23,PRP6,LSM7,SNT309,LEA1
YLR424W,GCN2,SNU23,BUD31,PRP22,LSM6
LSM2,PRP38,DIB1,ISY1,YJU2,PRP45
LIN1,SMD2,CUS1,ECM2,CDC40,IST3
SMD1,LSM3,CWC2,LSM8,PRP46,SYF1
AAR2,PRP4,SNU66,SPP381,PRP9,SME1
BRR2,YKR022C,PRP19,CWC22,PRP3,PRP2
CEF1,LSM4,CLF1,YBL104C,PRP8
360.10.20
RPN11,RPN12,RPN9,RPN10,RPN6,ARK1
DIN7,RPN7,RPT4,UBP6,RPN5,RPT1
NCP1,RPN8,RPT2,RPN13,RPN1,ECM29
NAS6
360.10.10
PRE4,PRE6,PRE2,BLM3,PRE10,PUP2
PRE3,PUP3,PRE5,SCL1,PRE9,PRE7
PRE1
510.190.10.20.10
230.20.20
510.190.10.10
230.20.10
510.190.10.20.20
510.190.10
NGG1,DHR2,SPT8,SGF73,SPT20,SGF29
GCN5,UBP8,HFI1,SPT3,SPT7,ADA2
260.60
190.20
TRS23,TRS120,KRE11,SKN1,BET5,GSG1
TRS130,BET3,TRS31,TRS33,TRS20
510.40.10
510.90
RPB7,RPB3,YER139C,TFG1,YPR093C,RPB2
RPO26,RPB11,RPB9,SPT5,SPT4,RPB4
IWR1,RPO21,TFG2
510.190.50
SWI3,SNF12,ARP9,SNF5,SNF2,SNF6
SWI1,SNF11,YFL049W
510.10
RPB8,RPA12,RPA190,RPA43,RPB10,RPC40
RPA49,RPB5,AMS1
510.70.20
TAF11,TAF7,TAF12,TAF5,TAF4,TAF9
TAF3,TAF13
510.120
RPC31,RET1,MAF1,RPC19,RPC11,RPC25
RPC34,RPC82,RPC17,RPC53,RPO31,RPC37
440.14.10
440.12.20
440.30.20
POP8,SNM1,POP1,POP5,RPP1,POP3
POP7,POP4,POP6
440.12.10
MTR3,RRP42,CSL4,RRP46,SKI6,RRP45
RRP6,LRP1,RRP43,YPK1,RRP4,DIS3
SKI7,RRP40
400
510.190.120
RSC9,RSC4,RSC3,STH1,RSC2,OAC1
SFH1,MCM1,NPL6,RSC58,RSC30,RSC8
RSC1,HTL1,BAS1,RTT102,RSC6
260.30.10
RET2,SEC28,SEC21,COP1,SEC26,RET3
SEC27,GLO3
160
VPS9,EXO84,EXO70,SEC8,SEC5,SEC6
SEC10,SEC15,SEC3
520.40
SEC65,SRP72,LHP1,SRP68,SRP54,SRP21
SRP14
410.35
410.30
410.20
410.10
ORC2,ORC4,ORC3,ORC1,ORC5,ORC6
310.40
SEH1,NUP84,NUP85,NUP120,NUP145,MTR2
SEC13
260.90
ARC15,ARC35,ARC19,ARC40,ARP3,ARC18
ARP2
60
APC1,CDC16,APC2,CDC23,DOC1
510.150
TFC8,TFC7,TFC3,TFC1,TFC4,TFC6
500.10.30
500.10.20
GCN3,GCD11,YLR215C,SUI3,RAS1,GCD7
GCD6,GCD2,GCD1,SUI2
470.10
GAL83,SNF4,PAK1,SNF1,REG1,SIP2
SIP1
410.40.30
RFC4,RFC2,YMR181C,RFC1,RFC3,RFC5
ELG1
140.10.20
CDC10,CDC3,AIR1,CDC11,SHS1,CDC12
BNI4,BUD4
520.20
OST3,STT3,OST6,OST1
520.10.20
SEC62,SEC72,SEC63,SEC66
440.10.20
440.10.30
CFT2,PFS2,REF2,SWD2,YHL035C,YSH1
PAP1,PTI1,SYC1,SSU72,YTH1,MPE1
CFT1,PTA1,TYE7
440.10.10
RNA15,PCF11,RNA14,CLP1
420.40
COX6,COX5A,COX4,COX9
410.40.60
RPS6B,PRI2,POL12,PRI1,POL1
390
CYM1,PDX1,PDA1,PDB1,"DUR1+2",LAT1
TCM62
260.80
90.20
PEP5,VPS33,VPS16,VPS8,VAM6,PEP3
VPS41
260.30.20
ERP2,ERP5,ERP3,EMP24,ERV25,ERP1
ACP1,GPI10,ERP4
260.20.20
APL1,APM4,APL3,APS2
260.20.10
APM1,APL2,YFL034W,RPL9A,APS1,APM2
APL4,RPL19A
220
VMA13,VMA8,VMA4,RAV1,VMA5
177
PFD1,GIM5,YKE2,PAC10,BUD27,GIM3
130
CCT3,CCT7,PLP2,CCT4,CCT2
110
BCY1,TPK2,TPK1,TPK3
90.10
RLF2,CAC2,MSI1
510.160
HAP2,HAP3,HAP5
510.110
133.50
CTK3,CTK2,CTK1
510.100
TFB4,CDC27,KRS1,FPR1,SSL1,TFB1
500.10.40
TIF34,PRT1,RPS7B,SUI1
480.10.05
SPC72,SPC98,SPC97,TUB4
450
SOL2,GLC7,YPL137C,GLC8,SDS22
440.12.30
SIK1,BFR2,RRP9,UTP11,NOP58,HFA1
NOP1,UTP21,UTP8,LCP5,YNR054C,UTP15
KRR1,BUD21,UTP20,RML2,IMP3,NOP6
UTP5,UTP14,EMG1,BMS1,UTP10,YGR145W
SOF1,UTP9,NOP14,UTP7,PWP2,IMP4
UTP4,MPP10,UTP6,DIA4,DIP2,NAN1
NOC4,UTP13,UTP18,YLR003C,UTP30
420.50
ATP1,ATP7,ATP5
420.30
COR1,YLR132C,QCR2,MRPL22,RBS1,QCR7
410.40.90
POL32,CDC2,HYS2
410.40.100
DPB3,DPB4,DPB2,POL2
260.30.30.10
260.30.30.20
VPS35,VPS17,PEP8,VPS5,VPS29
240.20
510.190.150
YBR095C,YMR075W,SIN3,TOP1,RPD3,DEP1
PHO23,SAP30,UME1,SDS3
133.20
PHO80,PHO85,PCL7,PCL8
133.10
CKS1,CLB3,SIC1,SRL3,CLN1,CLB4
YPL014W,PCA1
120.20
CHD1,YTA7,CKA1,CKB2,HOT1,CKB1
70
TRP3,TRP2,YKL218C
520.50
SRP102,SRP101
510.80
TFA2,TFA1
510.50
TOA2,TOA1
510.190.140
TUP1,CYC8
510.180.30.10
YKU80,YKU70
510.180.10.30
133.30
ARF2,PIN4,RPL26B,CCL1,KIN28
510.180.10.20
RAD23,RAD4,SRO7
510.180.10.10
YAL027W,RAD1,RAD10
510.170
CET1,CEG1,AVO1
500.50
HRP1,TCM10,AEP2,AEP1,SES1
485
LSC1,LSC2
480.20
480.10
TID3,NUF2,SPC24,SPC25
470.30.10
GPA1,STE4
440.30.30
SEN2,SEN54
430
WTM1,RNR2,RNR4
420.20
SDH1,SDH2
370
NAT1,ARD1
350.30
MAS1,MAS2,SMC4
350.10.10
AFG3,YTA12
330
FRS1,FRS2
310.20
NSP1,NUP159,NUP82
295
SPO7,NEM1
280
LYS2,LYS5
265
KEL2,KEL1,LTE1
260.70
VPS4,SNF7
260.50.10
TLG1,TLG2,VPS45
260.20.30
APM3,APL6
260.10
CLC1,CHC1
250
IDH2,IDH1
230.10
80
HHF2,HAT2,CPA1,HAT1,YLL022C
20
YMR31,KGD2,RPL15B,KGD1
180.30
BET2,BET4
180.20
180.10
RAM2,CDC43
140.20.30
MYO2,SHE4,MYO3
140.20.20
TIP41,GEA1,SST2,VPS71,YLR454W,ACT1
YIL172C,SAC6,ABP1
100
CNB1,CMP2
90.30
VMA22,VPH1
510.180.20
YDL156W,RFA2,RIM1,RAD52,RNH1
510.180.10.40
ELC1,RAD7
500.60
NAM9,MRPS35
445.30
445.20
445.10
YPT52,SKP1,YMR258C
440.40
SLS1,MTF2
440.30.10.20
CSN12,RDS3,PRP21,SMD3,HSH49,MSL1
SMB1,SMX3,PRP11,SMX2
410.40.20
RFA3,RTT105
340
RSA1,PFK1,YNL045W,YOR286W
260.50.20
VTI1,YKT6
230.20.40
YAF9,EAF5,EAF3,EPL1,SWC4,ESA1
ARP4,VID21