MixDTrees: A tool for querying and finding groups of gene expression profiles in the course of development (c) 2006-2007 Ivan G. Costa (c) 2006-2007 Christoph Hafemeister

Windows

Prerequisites

You will need Windows 98 or latter version, and the installation of Matlab Component Runtime (MCR).

Installation

• Download MCRInstaller.
• Run MCRInstaller and perform installation with default settings.
• Download mixtrees.zip.
• Uncompress the file you downloaded and double click it at DTreeQuery, MixDTrees or MixDTreesReport inside the bin folder.

Sources Version

Prerequisites

For DTreeQuery and MixtureTrees, you will need matlab 14 or earlier and a installation of the Bayes Net Toolbox. MixDTreesReport is implemented in python. You will need the following packages to run it:

• Python version 2.4.x. or latter. Sources etc. can be found at www.python.org.
• SciPy
• Numpy is a requirement for Scipy and can be find in the Scipy website.
• Gato.

Installation

• Download MixTree Sources.
• Uncompress the file you downloaded
• Open matlab, set the directory of uncompressed files as your working directory.
• Run add_bnt
• Call function corresponding to the desirable application (ie. TreeQuery.m or MixtureofTrees.m).
• See readme.txt for description of functions.
• Install all python packages described above.
• Set your PYTHON_PATH to include the directory where the MixDTreesReport.py has been installed.
• Run 'python MixDTreeReport.py'