Dataset Name	Array Type	Tissue	Total samples	Num of classes	Samples per class	Classes	Total Probes	Remaining Probes
Armstrong-2002-v1	Affymetrix	Blood	72	2	24, 48	ALL, MLL	12582	1081
Armstrong-2002-v2	Affymetrix	Blood	72	3	24, 20, 28	ALL, MLL, AML	12582	2194
Bhattacharjee-2001	Affymetrix	Lung	203	5	139, 17, 6, 21, 20	AD, NL, SCLC, SQ, COID	12600	1543
Chowdary-2006	Affymetrix	Breast, Colon	104	2	62, 42	B, C	22283	182
Dyrskjot-2003	Affymetrix	Bladder	40	3	9, 20, 11	T2+, TA, T1	7129	1203
Golub-1999-v1	Affymetrix	Bone Marrow	72	2	47, 25	ALL, AML	7129	1877
Golub-1999-v2	Affymetrix	Bone Marrow	72	3	38, 9, 25	ALL-B, ALL-T, AML	7129	1877
Gordon-2002	Affymetrix	Lung	181	2	31, 150	MPM, AD	12533	1626
Laiho-2007	Affymetrix	Colon	37	2	8, 29	Serrated CRC, conventional CRC	22883	2202
Nutt-2003-v1	Affymetrix	Brain	50	4	14, 7, 14, 15	CG, CO, NG, NO	12625	1377
Nutt-2003-v2	Affymetrix	Brain	28	2	14,14	CG,NG	12625	1070
Nutt-2003-v3	Affymetrix	Brain	22	2	7,15	CO, NO	12625	1152
Pomeroy-2002-v1	Affymetrix	Brain	34	2	25,9	CMD,DMD	7129	857
Pomeroy-2002-v2	Affymetrix	Brain	42	5	10, 10, 10, 4, 8	MD, Mglio, Rhab, Ncer, PNET	7129	1379
Ramaswamy-2001	Affymetrix	Multi-tissue	190	14	11, 10, 11, 11, 22, 10, 11, 10, 30, 11, 11,11, 11, 20	BR, PR, LU, CR, LY, ML, BL, UT, LE, RE, PA, OV, ME, CNS	16063	1363
Shipp-2002-v1	Affymetrix	Blood	77	2	58,19	DLBCL, FL	7129	798
Singh-2002	Affymetrix	Prostate	102	2	50, 52	N, PR	12600	339
Su-2001	Affymetrix	Multi-tissue	174	10	26, 8, 26, 23,12, 11, 7, 27, 6, 28	PR, BL, BR, CO, GA, KI, LI, OV, PA, LU	12533	1571
West-2001	Affymetrix	Breast	49	2	25,24	ER+, ER-	7129	1198
Yeoh-2002-v1	Affymetrix	Bone Marrow	248	2	43, 205	T-ALL, B-ALL	12625	2526
Yeoh-2002-v2	Affymetrix	Bone Marrow	248	6	15, 27, 64, 20, 79, 43	BCR-ABL, E2A-PBX1, Hyperdiploid>50, MLL, TEL-AML1, T-ALL	12625	2526
Alizadeh-2000-v1	Double Channel	Blood	42	2	21, 21	DLBCL1, DLBCL2	4022	1095
Alizadeh-2000-v2	Double Channel	Blood	62	3	42, 9, 11	DLBCL, FL, CLL	4022	2093
Alizadeh-2000-v3	Double Channel	Blood	62	4	21, 21, 9, 11	DLBCL1, DLBCL2, FL, CLL	4022	2093
Bittner-2000	Double Channel	Skin	38	2	19, 19	ML1, ML2	8067	2201
Bredel-2005	Double Channel	Brain	50	3	31, 14, 5	GBM, OG, A	41472	1739
Chen-2002	Double Channel	Liver	179	2	104, 75	HCC, liver	22699	85
Garber-2001	Double Channel	Lung	66	4	17, 40,4, 5	SCC, AC, LCLC, SCLC	24192	4553
Khan-2001	Double Channel	Multi-tissue	83	4	29, 11, 18, 25	EWS, BL, NB, RMS	6567	1069
Lapointe-2004-v1	Double Channel	Prostate	69	3	11, 39, 19	PT1, PT2, PT3	42640	1625
Lapointe-2004-v2	Double Channel	Prostate	110	4	11, 39, 19, 41	PT1, PT2, PT3, Normal	42640	2496
Liang-2005	Double Channel	Brain	37	3	28, 6, 3	GBM, ODG, normal	24192	1411
Risinger-2003	Double Channel	Endometrium	42	4	13, 3, 19, 7	PS, CC, E, N	8872	1771
Tomlins-2006-v1	Double Channel	Prostate	104	5	27, 20, 32, 13, 12	EPI, MET, PCA, PIN, STROMA	20000	2315
Tomlins-2006-v2	Double Channel	Prostate	92	4	27, 20, 32, 13	EPI, MET, PCA, PIN	20000	1288